PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G147100.1
Common NameB456_010G147100, LOC105774877
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 441aa    MW: 48352.8 Da    PI: 5.8414
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G147100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.81.2e-053323691254
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Gorai.010G147100.1 332 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 369
                         677888999*******998.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.992320369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.00E-5330373No hitNo description
SuperFamilySSF474591.44E-11330382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-9334377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MAEEFHAGIC RGTWWNSTKP MLTGCSLPPS TEVVDMGNLG YDTDMVDIRA RTRYYEESTK  60
NPVYGVSSTV FQGHPHHQAD SDSGVTSSSL LIDSTLQMMG FGLPSSTTSD WNLSLLRSNG  120
RTEFYNSILQ EDIDSRLNHR QETGMGSAQI LNYWSPKSHS GPGKDSSITV FEPIDQDISL  180
NSVTSSGNST PTCQGLSARF PMASSSYGYP STLLHSLFQS DPQTSEQQSL FNNRSINYMS  240
SAKSSWPKQQ PSSLRFSNNT PFWNASATGI NDVKTGFLPS PASQFLVQTF EEKANCPSST  300
TKTNSTEVGK SASGMKRPKL ESPSPLPTFK VRKEKLGDRI TALQQLVSPF GKTDTASVLH  360
EAIEYIKFLH DQVNVLSTPY MKQAVDSIQQ ENIDNLKDPD EPKQDLKSLG LCLVPISSTF  420
PVTNETTADI WTPTFGGTLR *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1472308e-57EF147230.1 Populus trichocarpa clone WS01229_K02 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012452898.10.0PREDICTED: transcription factor bHLH103-like
TrEMBLA0A0D2ST780.0A0A0D2ST78_G
STRINGVIT_00s0274g00070.t011e-166(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80622636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.18e-69bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]